Charging my players less for the freedom to take a sport rifle out hunting paracritters in the NAN rather than using pistols "Because that's all they know how to use..." makes me feel warm and fuzzy inside yet doesn't really change much of anything all that drastically.
This reminded me of something that seems a bit odd to me with the SR4 system. You can't default from a skill to another skill. I think if I was to houserule anything, I would allow defaulting within skill groups. I think that seems to be the most reasonable way of managing it.